Help Contents

• Do I need special software or browser settings to use PathCase?
• How do I use the PathCase Graph Viewer?
• How do I navigate PathCase with the Content Browser?
• What is the Advanced Query Interface and how do I use it to search pathways, processes, molecules and organisms?
• How are pathway and process Gene Ontology results obtained?
• What is GO significance and how is it obtained?
• What does displaying GO terms at different levels achieve?
• What does the annotation pathway graph visualize?
• How are related pathways in external databases found?
• How is the gene address resolution done in the PathCase GeneViewer?
• How does Pathways Genes Significance Query Work?
• Why do I keep on getting errors when I try to do X?
• What are challenges for analyzing and querying pathways?
• What is a curated layout?

Additional questions? Please feel free to e-mail them to (pathcase \\at\\ case \\dot\\ edu).